PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW04251.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 204aa MW: 22345.7 Da PI: 8.6285 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.6 | 5.2e-09 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 ++tG+Ck+G++CkF+H++ RWW04251.1 1 MKTGHCKFGSTCKFHHPQ 18 89**************97 PP | |||||||
2 | zf-CCCH | 41 | 3.3e-13 | 147 | 173 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++Ck++H+p RWW04251.1 147 PGQPECQFYMRTGDCKFGATCKYHHPP 173 5789*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MKTGHCKFGS TCKFHHPQQA EALVPSPAPA FYSPVQPLSI PSPQQYPPPV TWQFTRPSVF 60 PGSYMPGPYA PMLLSSGVVP VQGWNPYPVC EALVASVLVQ EDWRRVYGLP NQAFPLMPAY 120 SGPLTPVSSS VGPSNASRRG DKFPERPGQP ECQFYMRTGD CKFGATCKYH HPPDWSISKG 180 NCVLSPLGLP HRPVCISTSC HYLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 4e-49 | C3H family protein |