PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW04013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19096.3 Da PI: 10.4173 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.4 | 8.1e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skR++gilKKA+ELS+LCd++ +++f+++gk RWW04013.1 9 KRLENSSSRQVTYSKRKAGILKKAKELSILCDIDLVLLMFAPNGK 53 789****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MGRVKLKIKR LENSSSRQVT YSKRKAGILK KAKELSILCD IDLVLLMFAP NGKPTICVGD 60 RRKLESLEVS ALRKTFKKLD HDVNIQEFLG SSTQTVEELT NHLRSLHGQI LDVQKRLRYA 120 IHVNKDKIVD EVLRKIKRST NKQESFSSGL YVAVYDYETV VASFALF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-44 | M-type_MADS family protein |