PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWW03872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 287aa MW: 32514.7 Da PI: 8.5796 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 19 | 74 | 3 | 54 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR++ RWW03872.1 19 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRYR 74 5679**************************************************98 PP | |||||||
2 | bZIP_1 | 20.4 | 1.1e-06 | 94 | 136 | 19 | 61 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 19 rsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 r+R++ ++e ++L++ +L+a Nk L +e+++l+k+v++l RWW03872.1 94 RCREKQRKEAARLQTVNRKLTAMNKLLMEENDRLQKQVSQLVY 136 9**************************************9965 PP | |||||||
3 | START | 25.2 | 3.4e-09 | 215 | 277 | 2 | 63 |
HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHH CS START 2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskvdsgealrasgvvdmvlallve 63 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ + RWW03872.1 215 IAEETLTEFLSKATGTAIEWVQMPgMKQPGPDSIGIVAISHGCTGVAARACGLVGLEPTKVCS 277 789*********************88889*************************999987765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence |
MIALTSCEEG KMGIVDQGKY VRYTPEQVEA LERLYHDCPK PSSIRRQQLI RECPILSNIE 60 PKQIKVWFQN RRYRCFPAYN FLLLILHVLS FPIRCREKQR KEAARLQTVN RKLTAMNKLL 120 MEENDRLQKQ VSQLVYENGY FRQQTQNAAL TTTNTSCESV VTNGQQHLTP QHPPRDASPA 180 GYAKYCCSLW YAICLFRFFM AASNKVHCAC RLMSIAEETL TEFLSKATGT AIEWVQMPGM 240 KQPGPDSIGI VAISHGCTGV AARACGLVGL EPTKVCSHWE LTDSACV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.3 | 1e-116 | HD-ZIP family protein |