PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW03223.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 178aa MW: 20213 Da PI: 9.1664

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW03223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	45	99	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ eql Le+ F+ ++++ ++++eLA++l+L+ rqV vWFqNrRa+ k RWW03223.1 45 RKKLRLSGEQLSLLEDSFRAHNTLAPDQKQELAQRLHLQPRQVEVWFQNRRARTK 99 6788899**********************************************98 PP
2	HD-ZIP_I/II	121.8	3.5e-39	45	135	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rls eq++lLE+sF+++++L p++K+ela++L+lqprqv+vWFqnrRARtk+kq+E+d+ +L+r++++l++en+rL++e e+r+ + RWW03223.1 45 RKKLRLSGEQLSLLEDSFRAHNTLAPDQKQELAQRLHLQPRQVEVWFQNRRARTKLKQTEVDCGFLRRCCERLANENRRLKRELMEMRSVV 135 69************************************************************************************99765 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MREEECNVSL SLAIGGVEDL PFIKSLDQTF DPEKRDGSGS GSGTRKKLRL SGEQLSLLED 60 SFRAHNTLAP DQKQELAQRL HLQPRQVEVW FQNRRARTKL KQTEVDCGFL RRCCERLANE 120 NRRLKRELME MRSVVKPGSQ LSGELRKAAR LRMCSSCENM TGDEKKSSLL STINSSAD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	44	50	TRKKLRL
2	94	102	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47370.1	7e-44	HD-ZIP family protein