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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWW02986.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | MYB | ||||||||
| Protein Properties | Length: 269aa MW: 30595 Da PI: 7.7034 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 49.6 | 9.4e-16 | 63 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v q+G+ +W++I +++ gR++k+c++rw++
RWW02986.1 63 RGHWRPAEDAKLKELVSQYGPQNWNLITEELE-GRSGKSCRLRWFNQ 108
899*****************************.***********996 PP
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| 2 | Myb_DNA-binding | 54.9 | 2.1e-17 | 115 | 158 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r+++++eE+e+l+ a++++G++ W+ Iar + gRt++ +k++w+
RWW02986.1 115 RKAFSEEEEERLLAAHRLYGNK-WAQIARLLH-GRTDNAVKNHWHV 158
789*******************.*********.***********96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 269 aa Download sequence |
MAPNELGHTG ETELFPGAPL TFVAVMEEDE NAENGKSYNK GKEEEGDHGI VHETEQQHKV 60 CARGHWRPAE DAKLKELVSQ YGPQNWNLIT EELEGRSGKS CRLRWFNQLD PRINRKAFSE 120 EEEERLLAAH RLYGNKWAQI ARLLHGRTDN AVKNHWHVIK ARKQREQSNA HRRRKPPAPS 180 PIFSPSHQAL PRRRRKEVST SNNAGSGESS IISGTRDECD STCTDLSLNS LTTTTSSSIA 240 PPSFLNRHIP CHQPHPFDML NGIYYDLFF |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 172 | 195 | RRRKPPAPSPIFSPSHQALPRRRR |
| 2 | 173 | 196 | RRRKPPAPSPIFSPSHQALPRRRR |
| 3 | 192 | 197 | RRRRKE |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G26780.1 | 5e-63 | MYB family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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