PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV98702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 158aa MW: 17591.5 Da PI: 10.2907 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.7 | 9.5e-16 | 29 | 73 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien +r vtfskRr+g++ A EL+ ++a +av++fss+g+ RWV98702.1 29 KKIENLERRAVTFSKRRKGLFAMAAELCACTGAHAAVVVFSSSGR 73 68*****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MPSMEPALAM ASAVKSKRTS RGRQKIRIKK IENLERRAVT FSKRRKGLFA MAAELCACTG 60 AHAAVVVFSS SGRPYACSYP SVDEVLRRYL VGQFRERAGL ERMQEPVQMR ALLLGEGDER 120 AAELHRGAVL EELQRGVEEM EKLRWLVLAK ADLGGATE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 4e-20 | M-type_MADS family protein |