PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV98488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 151aa MW: 15997.5 Da PI: 4.8606 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 44.5 | 2.6e-14 | 101 | 124 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tGtCk+G+ CkF H+p RWV98488.1 101 VICSFYMKTGTCKFGAACKFDHPP 124 79********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence |
MSGLVTLLSV NDFCAKLQGS ETADISILPE RLSEPVCSGE PDCPFYLKTG RSVSSQQSIL 60 KGLGNWNVMV LKSAAVQSVS VAVPCLEVKL LIRPMSLQGA VICSFYMKTG TCKFGAACKF 120 DHPPPGEAIA MATIQGTAEG EETKDAPEVQ Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-16 | C3H family protein |