PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWV96967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26175.5 Da PI: 9.5882 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.6 | 4.9e-16 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r t+ kRr+g++KK ELS+LC++e++v+++ ++ RWV96967.1 11 IVNDATRRATLKKRRKGLIKKVRELSILCGVEACVVVYTPHE 52 679999*******************************98753 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence |
MARNKVKLAW IVNDATRRAT LKKRRKGLIK KVRELSILCG VEACVVVYTP HENQPVTWPS 60 LPEAAEMMAR FKSMPEIERS RKMVNQETFL HLRIAKLLEQ LRRQQRENRE IEMTWLTWEG 120 FHGRSFDDLG VEDASALAWS VDTKLKEVND RRELLLKRLT MAPPPPPMPV APAAAVTGMM 180 PMPMERQGHP AEGSQRPNWL MDMMSPWSDE GQMYVDPISS WPDSLFP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 22 | 26 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-27 | M-type_MADS family protein |