PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV96798.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

RAV

Protein Properties

Length: 386aa MW: 43763.1 Da PI: 10.1223

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV96798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.6	2.4e-11	98	146	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ + r++lg+f + eAa+a++ a ++++g RWV96798.1 98 SRYKGVVPQP-NGRWGAQIYEK-----HERVWLGTFNAEAEAARAYDVAVRRFRG 146 78**9888.8*****3.....5******99**********998 PP
2	B3	97	1.2e-30	229	324	1	90
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae+h gg +++ l++ed gr+W+++++y+++s++yv+tkGW++Fvk++gL++gD+v F+++ e+ RWV96798.1 229 FDKAVTPSDVGKLNRLVVPKQHAEKHlplqdaGGGASNGMLLKFEDGCGRVWRFRYSYWNSSQSYVMTKGWSRFVKEKGLEAGDVVSFQRSTGPEK 324 89****************************6667799************************************************7654444 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MQRSAPSDTA AVDTRGDALA EHRQIYRNHM LTNLPLLWFP HSCPCHTIFY PQARYKESTS 60 RPTHLPYLFT RRDMETSSTG DAWGESSNRD ESRKLPSSRY KGVVPQPNGR WGAQIYEKHE 120 RVWLGTFNAE AEAARAYDVA VRRFRGRDGV TNFKPLNEAD DDDAAEISFI GSRSKVEIVD 180 MLRRHSYHHE LQQSRRSFGA DKMKTAPSRG AAMAGATESP VGAQRQHLFD KAVTPSDVGK 240 LNRLVVPKQH AEKHLPLQDA GGGASNGMLL KFEDGCGRVW RFRYSYWNSS QSYVMTKGWS 300 RFVKEKGLEA GDVVSFQRST GPEKQLFIDS KVRAGREHTA APMPRPPVQH FRLFGVNIVR 360 NPATHRDDTE LTSSQDMFKR QRTEAL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MQRSAPSDTA AVDTRGDALA EHRQIYRNHM LTNLPLLWFP HSCPCHTIFY PQARYKESTS  60
RPTHLPYLFT RRDMETSSTG DAWGESSNRD ESRKLPSSRY KGVVPQPNGR WGAQIYEKHE  120
RVWLGTFNAE AEAARAYDVA VRRFRGRDGV TNFKPLNEAD DDDAAEISFI GSRSKVEIVD  180
MLRRHSYHHE LQQSRRSFGA DKMKTAPSRG AAMAGATESP VGAQRQHLFD KAVTPSDVGK  240
LNRLVVPKQH AEKHLPLQDA GGGASNGMLL KFEDGCGRVW RFRYSYWNSS QSYVMTKGWS  300
RFVKEKGLEA GDVVSFQRST GPEKQLFIDS KVRAGREHTA APMPRPPVQH FRLFGVNIVR  360
NPATHRDDTE LTSSQDMFKR QRTEAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	2e-97	RAV family protein