PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV96315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 146aa MW: 16430.2 Da PI: 11.7788 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.8 | 9.4e-31 | 90 | 140 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+ RWV96315.1 90 KRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 140 79***********************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence |
MGRLFPTPTA RRRRTAQLMM VKAIRGDKLT GAGFLPKSRA EGSRVFLDLR TSMYSSRKQI 60 PAGFVLLVVL SSNPSIERKG NMGRGKIEIK RIENNTSRQV TFCKRRNGLL KKAYELSVLC 120 DAEIALIVFS SRGRLYEYSN NRSLSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 1e-36 | MIKC_MADS family protein |