PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV93691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 188aa MW: 20625.6 Da PI: 8.8643 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.2 | 5.6e-13 | 108 | 134 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ RWV93691.1 108 PGQPECQFYMKTGDCKFGAVCKFHHPR 134 5789*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
HVKSQAVAAT RIRGGYPERV GQPDCQVILS CIFGTLHSHH DRSLIYLQGQ LGSSPESQQR 60 IGTAQFYSAP QQGETSAGAQ GKFPSYRQGP VPVGMYAVPR ENIFPERPGQ PECQFYMKTG 120 DCKFGAVCKF HHPRERLVPV PNCVLSPLGL PLRPVSYSSN LPFFHTSVNS LSCLGSVLYL 180 TLLAVPFH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.1 | 7e-41 | C3H family protein |