PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWV92956.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
Family LBD
Protein Properties Length: 252aa    MW: 26514.9 Da    PI: 7.8341
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWV92956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.52.7e-44251241100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC++dCv+apyfp +qp+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+
  RWV92956.1  25 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELQPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHQLRQLQMDLSCAKS 123
                 7**********************************************************************************************9998 PP

      DUF260 100 e 100
                 e
  RWV92956.1 124 E 124
                 7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MASSSPQVPV SSATASASPS STSSPCAACK FLRRKCQPDC VFAPYFPPDQ PQKFVHVHRV  60
FGASNVTKLL NELQPYQRED AVNSLAYEAD MRLRDPVYGC VGVISILQHQ LRQLQMDLSC  120
AKSELSKYQS AAAVAAAAAA GTPATSFGAA SPVTAATGHG FINVNHPIGM TGFVYGRDQF  180
FPAAARDPTY NLHMMLRNYD ADLATRLASN GAYDADLAAL NATSAAAFGL FGGQFSKPSA  240
AGGDERPGMG PL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.34e-56LBD family protein