PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV92529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 331aa MW: 35718.9 Da PI: 9.7863 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.4 | 6.5e-17 | 19 | 65 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i +k ++fskR+ng++ KA+ LS+LC+++vav++fs+tg+ + + RWV92529.1 19 IADKNALFISFSKRKNGVFTKASDLSTLCGTDVAVVVFSPTGRAFSF 65 566666679*********************************97766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence |
MLKRKKTSKG KQKIELQKIA DKNALFISFS KRKNGVFTKA SDLSTLCGTD VAVVVFSPTG 60 RAFSFGSPAV VPIMERFLSG CVFPSFGSPE EQICRRKSIH EKNRQVMELS RQVEAARAAK 120 AELEAQLKTA TQGLEWLQDW DNVTVQQLDE LVKSLELLKT RAQNRWTKLV SIVRPSPPNE 180 GTVAAAVLEG ASGSRMNPML PFRGFTTDDP GPSSSNQPPI VDHAGAPGAG GGMLMGDPRW 240 QGFPPMGLPP ITDYYMDPSA SSSNAITVAG VPGSSGPAGF GVIDPGWPGI QAIMNPVPPA 300 NSVRMVNPYE PVRASLSHAH YCFRTSTIMT Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 33 | KRKKTSKGKQKIELQKIADKNALFISFSKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-22 | M-type_MADS family protein |