PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV92528.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

M-type_MADS

Protein Properties

Length: 523aa MW: 56795.8 Da PI: 6.5902

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV92528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.1	1.8e-16	19	67	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +rie r+vtfskR+ g + KA+ L++LC++evav++fs+ g+ y + RWV92528.1 19 ERIEKPGARYVTFSKRKYGAFTKASDLCTLCGTEVAVVLFSPVGRPYSF 67 58999999**********************************9987766 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MNLLGKRKTS KGKQKIKLER IEKPGARYVT FSKRKYGAFT KASDLCTLCG TEVAVVLFSP 60 VGRPYSFGCP NVEGVVDRFF SNYLIPSFGS HAHRPYRQEI VDGNVFHQVD ELRKQINVEI 120 ARKTLLQKQL TAVTRGLESL ENLDGMDLHM LDELANMLLR IKTQAANRVV QLLIGSRASS 180 SNPPSTFVPR GVATMDSRGP WVQPMLNPFL PIEGFSIYPK ASSSNAITIN DHVGTSNPDG 240 IMNVHSTWQQ GFQSILDLIP PIKEFSTDPR ASSSPNAVTS VDHAGTSSSG GIINVDSRSQ 300 GFQSILNPIP PIEEFSTNPR ASSSPNPATI ADHASTCSSN GIMKVDSRWQ GFQSMLNPIP 360 PTKGFSIDPR ASSPNTATIV DHAGTSSFDG IMNVDSRWQG FQSILDSIPP IKEFSIDPRE 420 SSPDEATIVD HAGTSSSDGI VNVDSRWQGF QSILNPIPPI KELSTDSRAS SSPDAATIVD 480 HAGTSNSIGI MNVDSRWQDF QSILNPNPPV EGTSSKFNDT IVE

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MNLLGKRKTS KGKQKIKLER IEKPGARYVT FSKRKYGAFT KASDLCTLCG TEVAVVLFSP  60
VGRPYSFGCP NVEGVVDRFF SNYLIPSFGS HAHRPYRQEI VDGNVFHQVD ELRKQINVEI  120
ARKTLLQKQL TAVTRGLESL ENLDGMDLHM LDELANMLLR IKTQAANRVV QLLIGSRASS  180
SNPPSTFVPR GVATMDSRGP WVQPMLNPFL PIEGFSIYPK ASSSNAITIN DHVGTSNPDG  240
IMNVHSTWQQ GFQSILDLIP PIKEFSTDPR ASSSPNAVTS VDHAGTSSSG GIINVDSRSQ  300
GFQSILNPIP PIEEFSTNPR ASSSPNPATI ADHASTCSSN GIMKVDSRWQ GFQSMLNPIP  360
PTKGFSIDPR ASSPNTATIV DHAGTSSFDG IMNVDSRWQG FQSILDSIPP IKEFSIDPRE  420
SSPDEATIVD HAGTSSSDGI VNVDSRWQGF QSILNPIPPI KELSTDSRAS SSPDAATIVD  480
HAGTSNSIGI MNVDSRWQDF QSILNPNPPV EGTSSKFNDT IVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	5e-23	M-type_MADS family protein