PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV89920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19509.3 Da PI: 11.8868 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 47.2 | 6.5e-15 | 2 | 62 | 1 | 56 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C++lrr+C+++C l+p++ +++q++++ +v+k+FG++ ++++++a+p ++r+ RWV89920.1 2 SCNGCRILRRGCSDSCLLRPCLqwidsAEAQAHATVFVAKFFGRAGLMSFISAVPSSQRPG 62 6*********************9999777889**************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MSCNGCRILR RGCSDSCLLR PCLQWIDSAE AQAHATVFVA KFFGRAGLMS FISAVPSSQR 60 PGSSPSTSLI CTVSSLLSPE PSVLTRPNPF GRSSVPILAL RGVRADHQPG ERRRGPAVDR 120 QLAPLPGGGG DRPPRRRAPP ALEYRRRGPR RRRDAGGGRP PPSHEDGVLL LLFGQAAEGA 180 GSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 153 | RRRAPPALEYRRRGPRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 4e-30 | LBD family protein |