PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV89094.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 28035.5 Da PI: 8.3489 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.6e-28 | 60 | 109 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s RWV89094.1 60 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 109 79********************************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MLTAEACLLT STKTTEAPEN DENSNSNRQS CCGSHLCHEH VEQESSSQHL IAYRAALQIK 60 RIENNTNRQV TFSKRRNGLI KKAYELSVLC DIDIALIMFS PSGRLSHFSG PTHVLFRIIY 120 LHSHFDVIVS LIYYMQELQQ EICRYQQQLQ LMELRLRYCP THKILIKLVP YCFRMNRFFE 180 PDPLSFTSIA DLESCEKFVM EALQRVTARK VSPHSFRCFL SPAMFTKGVM VLVYYACRNI 240 Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 1e-34 | MIKC_MADS family protein |