PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV88487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 286aa MW: 30330.2 Da PI: 6.0462 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.5 | 3.3e-31 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+ RWV88487.1 2 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDDLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEA 100 6*************************************************************************************************9 PP DUF260 95 allke 99 +l ++ RWV88487.1 101 VLKGS 105 98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence |
MSCNGCRVLR KGCSENCSIR PCLQWIKSPE SQANATVFLA KFYGRAGLMN LINAGPDDLR 60 PAIFRSLLYE ACGRIVNPIY GSVGLLWSGS WQLCQAAVEA VLKGSPILQI PSETVASIPA 120 PPLKAYDIRH VFKGPGAAAA SKAAAELHKV NKPRSRFKRS GAKPTRAATP PPEFQPARSH 180 ETVASDGTVP LTPSAAAVGE DGECRENESM ASADTAEEAS HVSQGEPQTA EEAEQEEVSL 240 ELTLGLEPAS RSARPTDHET ETRCDVSSWD AVARTSGLGL ALPPPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 6e-80 | LBD family protein |