PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV88420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LSD | ||||||||
Protein Properties | Length: 227aa MW: 25379.3 Da PI: 7.676 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.7 | 7.7e-13 | 174 | 198 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C++V RWV88420.1 174 CGNCHMLLMYQYGARSVKCAVCNFV 198 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
RRVSTTTTTT TTTVFLQQPQ RVRRPERCLA DFDFVVLVTD SYETGVGIEY MSTMALMDLE 60 DCYNFRFSLF DSLQRGNMNK NPSFLTQIGD GSANLCLMLK EDTVLGRRIR HQSEMPVTLA 120 PYPTPPVPFT TPNGICLLVH MENKQLMHDH IFLCVKVTNF TCLVAANQVA HVNCGNCHML 180 LMYQYGARSV KCAVCNFVTS VGVSIHGNAL PFYLNIFSVN TLSGISS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-19 | LSD family protein |