PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV88221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 19464.4 Da PI: 10.4223 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.8e-28 | 125 | 175 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g++KKA ELSvLCda+va+i+fsstgkl+e++s RWV88221.1 125 KKIDNTAARQVTFSKRRRGLFKKAAELSVLCDADVALIVFSSTGKLFEFCS 175 68***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MYVWHDKTSV GSQKETVTRR DDDVPGLGGP HAARNSRACA VGVSGSGYAT PQPSWAPLAV 60 RPWLKRHPTH ALLVFGVCHL AYTYFVRTCM QANVGGINPH EHSPLRVILK TAGGETMVRE 120 KIQIKKIDNT AARQVTFSKR RRGLFKKAAE LSVLCDADVA LIVFSSTGKL FEFCSSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-34 | MIKC_MADS family protein |