PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV87780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 118aa MW: 13285.5 Da PI: 8.9276 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87 | 2.6e-27 | 49 | 115 | 1 | 67 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 +CaaCk+lr+kC+++ v+apyfp +qp+kf v+++FGasnv+kll++l++ +red+++sl+y+A++ RWV87780.1 49 PCAACKFLRQKCQPESVFAPYFPPDQPQKFVHVQRVFGASNVTKLLHELHPYKREDVVNSLAYKADI 115 7****************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence |
MVPNLQKRKL QETHYREQLL LALVFYACLP VSAVREMVSA VAAAAAASPC AACKFLRQKC 60 QPESVFAPYF PPDQPQKFVH VQRVFGASNV TKLLHELHPY KREDVVNSLA YKADIVEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 5e-34 | LBD family protein |