PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV87688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19797.6 Da PI: 8.5185 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.2 | 7.6e-40 | 13 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC++ap+fpa++p+kfanvhk+FGasnv+kll++ r da+sslvyeA+ar+rdPvyG+v+ i++l++q++ l+a+la++++ RWV87688.1 13 PCAACKLLRRRCTQDCIFAPHFPADEPHKFANVHKVFGASNVSKLLQH-----RGDAVSSLVYEANARVRDPVYGCVAAISTLHRQIQALQAQLAMAQA 106 7*********************************************99.....*******************************************998 PP DUF260 100 e 100 + RWV87688.1 107 Q 107 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MKELARKHST VSPCAACKLL RRRCTQDCIF APHFPADEPH KFANVHKVFG ASNVSKLLQH 60 RGDAVSSLVY EANARVRDPV YGCVAAISTL HRQIQALQAQ LAMAQAQMVH LRMSHAASLA 120 RAGLGHSPMG AGSTSTGSSS MSPTHNQLLE EPDTTVNAKP VFALDMVALD QTNLESEPPI 180 WSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 6e-54 | LBD family protein |