PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV87075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25604.4 Da PI: 10.8364 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.9 | 4.9e-27 | 2 | 53 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E.EEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae.vaviifsstgklyeyss 51 krien + rqvtfskRr+g+lKKA+ELSvLCd+e va+iifss++klye++s RWV87075.1 2 KRIENATSRQVTFSKRRTGLLKKAFELSVLCDVEkVALIIFSSRDKLYEFAS 53 79*******************************66***************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MKRIENATSR QVTFSKRRTG LLKKAFELSV LCDVEKVALI IFSSRDKLYE FASSRWYDAA 60 AYSATLTLAL VPRLMAREKG KLNNLTTPPP QRTTMTASGF SLGIEGGLVC VGKGGRRREE 120 ARDVRPVSCT HWSGDDPSGR GRVGHLCTRS FAFAVLRDQG FLLPTRRWDP RWKHSLPPLS 180 IWCFLAGPRQ SSRSGGGPAT AIGYFLDETE LTTNLDRYRK NRKHLEIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-24 | MIKC_MADS family protein |