PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV84586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | RAV | ||||||||
Protein Properties | Length: 260aa MW: 29302.8 Da PI: 8.8435 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.7 | 1.4e-13 | 46 | 94 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f + eAa+a++ a ++++g RWV84586.1 46 SKYKGVVSQP-NGRWGAQIYEK-----HQRIWLGTFNEEAEAARAYDIAVQRFRG 94 89****8888.8*********3.....5**********99************998 PP | |||||||
2 | B3 | 79.8 | 2.7e-25 | 178 | 260 | 1 | 77 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ tpsdv+k++rlv+pk++ae++ gg + + l++ed g++W+++++y+++s +yvlt+GW++Fvk+++L++g RWV84586.1 178 FDKAVTPSDVGKLNRLVIPKQHAEKYfplqktGGGASKVVLLRFEDGCGKEWRFRYSYWNSSHSYVLTRGWSRFVKEKRLEAG 260 89*************************9999955566888999999999*******************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MATSSIEEAC EETRASKCLQ RVGSGGSEVI DPEGCVEAES RKLPSSKYKG VVSQPNGRWG 60 AQIYEKHQRI WLGTFNEEAE AARAYDIAVQ RFRGRDAITN FKPLNDADDE DAEELFFLDS 120 HAKHEIIEML RKRTYHNELQ QTKRSMGEDN KKGIAARSNA AVAGATDALT GAQRQHLFDK 180 AVTPSDVGKL NRLVIPKQHA EKYFPLQKTG GGASKVVLLR FEDGCGKEWR FRYSYWNSSH 240 SYVLTRGWSR FVKEKRLEAG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-101 | RAV family protein |