PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV82806.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 358aa MW: 40150.6 Da PI: 11.3185

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV82806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.4e-20	237	292	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rr+R++f++eq++ +e++Fe + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k RWV82806.1 237 RRPRRRFSEEQIKSMESMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 292 89*****************************************************9 PP
2	HD-ZIP_I/II	117.9	5.6e-38	240	329	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +rr+s+eq+k++E++Fe+++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aLk+ ydal ++ ++L+ke++ L ++++ RWV82806.1 240 RRRFSEEQIKSMESMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYRALKADYDALLSSFDSLKKEKQLLLQQVT 329 79**********************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MELKTLCYGS YVNVTTHFVV DAQRGARQRP RRLRAARTAG GWGGVGELPH QGACSSQKEA 60 ETWGRGSPAA LGEVGTQQPS AMRAGCRRGK IIPPPASRRT TPRQSLHCES VARSLLHVVV 120 AAGATADEVG YTSPLHDPST RDGDPPPPPT KQDVDGRSAA HSPRLLPRPP THPPTRPPSP 180 HHPYSWLDAK IASLFYLAPP PRPPRPVSRH SGFSRPDPGR RWMNPTAESS KSKGDRRRPR 240 RRFSEEQIKS MESMFETQTK LEPRQKLQLA RELGLQPRQV AIWFQNKRAR WKSKQLEREY 300 RALKADYDAL LSSFDSLKKE KQLLLQQVTH RRLLVSPSSS FSVDRSPIPP HSCKTWQN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MELKTLCYGS YVNVTTHFVV DAQRGARQRP RRLRAARTAG GWGGVGELPH QGACSSQKEA  60
ETWGRGSPAA LGEVGTQQPS AMRAGCRRGK IIPPPASRRT TPRQSLHCES VARSLLHVVV  120
AAGATADEVG YTSPLHDPST RDGDPPPPPT KQDVDGRSAA HSPRLLPRPP THPPTRPPSP  180
HHPYSWLDAK IASLFYLAPP PRPPRPVSRH SGFSRPDPGR RWMNPTAESS KSKGDRRRPR  240
RRFSEEQIKS MESMFETQTK LEPRQKLQLA RELGLQPRQV AIWFQNKRAR WKSKQLEREY  300
RALKADYDAL LSSFDSLKKE KQLLLQQVTH RRLLVSPSSS FSVDRSPIPP HSCKTWQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	242	RRRPRRR
2	237	243	RRRPRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	1e-33	HD-ZIP family protein