PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV80955.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 400aa MW: 44334 Da PI: 8.7425

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV80955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.6e-06	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RWV80955.1 66 YVCEICNQGFQRDQNLQMHRRRH 88 9*********************9 PP
2	zf-C2H2	15.3	5.7e-05	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ RWV80955.1 143 WVCSRCSKAYAVQSDYKAHLKTC 165 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MLSSPQKTPP HTSTSCLEDG SSSKRKRRPA GTPGTFVVIQ LANTVSDPDA EVVSLSPRTL 60 LEAERYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKREAA AVRKRVFVCP EPSCLHHDPR 120 HALGDLVGIK KHFRRKHSNH KQWVCSRCSK AYAVQSDYKA HLKTCGTRGH SCDCGRVFSR 180 VESFIEHQDS CNGAGGLSWT ASSTTPSAAT NDGAPAPNDH RLDLLHNLEL QLLPTSNTHQ 240 SHATSSPSSS LTLVSDEAQA AELQLSLGPR ESETALPSIS PSSKAGCERQ EQALACETRE 300 QAMKQVELAE KEFANARRIR QQAQADLQNA YLLRDHARKQ MNLLLLQMTC HACRKQFQPN 360 PDSAFAESSP PSATCVSSLM TGIKRDDINV GHHLPKFWST

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MLSSPQKTPP HTSTSCLEDG SSSKRKRRPA GTPGTFVVIQ LANTVSDPDA EVVSLSPRTL  60
LEAERYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKREAA AVRKRVFVCP EPSCLHHDPR  120
HALGDLVGIK KHFRRKHSNH KQWVCSRCSK AYAVQSDYKA HLKTCGTRGH SCDCGRVFSR  180
VESFIEHQDS CNGAGGLSWT ASSTTPSAAT NDGAPAPNDH RLDLLHNLEL QLLPTSNTHQ  240
SHATSSPSSS LTLVSDEAQA AELQLSLGPR ESETALPSIS PSSKAGCERQ EQALACETRE  300
QAMKQVELAE KEFANARRIR QQAQADLQNA YLLRDHARKQ MNLLLLQMTC HACRKQFQPN  360
PDSAFAESSP PSATCVSSLM TGIKRDDINV GHHLPKFWST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	29	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-102	C2H2 family protein