PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV80064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 24831.1 Da PI: 7.1484 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.5 | 1.5e-40 | 39 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+ RWV80064.1 39 PCGACKFLRRKCMAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQ 137 7***********************9989********************************************************************999 PP DUF260 99 ee 100 ++ RWV80064.1 138 AH 139 86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MSGNPTPSIG GATGGGSGVA GGGGGTSGGG GSAGGGSGPC GACKFLRRKC MAGCIFAPYF 60 DSEQGAAHFA AVHKVFGASN VSKLLLHIPA HKRLDAVVTI CYEAQARLRD PVYGCVAHIF 120 ALQQQVVNLQ AELSYLQAHL ATSEMPSPPP PLPPPLVVAP IPFAISDLPS AANLPTAVDL 180 STLFNPLGQP AWTLQQQQQQ LSNSTRSPSE SSGFEGGDLQ ALARELLDRH RTATSEPPPV 240 SQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 3e-72 | LBD family protein |