PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV78892.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 24513.7 Da PI: 12.233 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 58.8 | 1.5e-18 | 38 | 89 | 1 | 52 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpee 52 +CaaCk+lrr+C+ +C lap fp ++p kf +h++FGasn++k+l+ ++e RWV78892.1 38 PCAACKILRRRCTVSCLLAPFFPPTEPLKFTTAHRVFGASNIIKILQVSSRE 89 7*********************************************976554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MSSSDTATAS ATTKTASSPS LSSSANSGPP PHPTAPSPCA ACKILRRRCT VSCLLAPFFP 60 PTEPLKFTTA HRVFGASNII KILQVSSREF NSHSQERSLM PSHTLTGAAG EQEGGRGGQH 120 GVRGERQVER SSLRERRGHL PPPEASGRAP SAAGPSAGEA CHLASSARAP VRFNGDGSVA 180 AAAPGRGHGW RRRRLLHASE RRVLRRRLRR PGIGLGGTPV GMRNLHVGKL ASH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 195 | WRRRRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-20 | LBD family protein |