PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV78879.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

LBD

Protein Properties

Length: 445aa MW: 47682.5 Da PI: 8.8816

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV78879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37	9.9e-12	245	288	56	99
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++++sl+yeA+ r+ +P+yG++g+++++++ql+q+++e++l ++ RWV78879.1 245 AIFQSLLYEACGRIVNPIYGSLGLLWSGSWQLCQAAVEAVLKGA 288 689***********************************998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MTHMLSLLAD WTYGNMGTRR DCTSALPSIS TVVTFDVTRV ANGAHLRVSR PSVRPCFAIR 60 KPLATYRRAP TVPETGPRRA LCADARTRSV APSLSLLRKM WGRGLSGKRG RHTPIQHHPT 120 FGALYSSPPS SALLASPPLL HPLPLTCITP SHSVFFYVLS SVLLLLVLLL AGCSLVLVAC 180 REEFAVAYEL SAEDADELQW MSSPAERLQR RVHHPPLPAV DQEPRGTGQR HRLPCQGYAC 240 VPLTAIFQSL LYEACGRIVN PIYGSLGLLW SGSWQLCQAA VEAVLKGAPI TQTSSDSAAA 300 AVPAFKAYDI RHVAKKSDAA AVPGDLHSVA ARSRTRFKRS TVRPAAPPAG ALAVSEPGLF 360 RQADSHDTEE SRENGSTFSA ETVEGSHVSQ VEPDAEPADV GLDLSLGLDP RSRNRGGVAG 420 GDPAVVPQKE RQRACPVELG LSLAA

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MTHMLSLLAD WTYGNMGTRR DCTSALPSIS TVVTFDVTRV ANGAHLRVSR PSVRPCFAIR  60
KPLATYRRAP TVPETGPRRA LCADARTRSV APSLSLLRKM WGRGLSGKRG RHTPIQHHPT  120
FGALYSSPPS SALLASPPLL HPLPLTCITP SHSVFFYVLS SVLLLLVLLL AGCSLVLVAC  180
REEFAVAYEL SAEDADELQW MSSPAERLQR RVHHPPLPAV DQEPRGTGQR HRLPCQGYAC  240
VPLTAIFQSL LYEACGRIVN PIYGSLGLLW SGSWQLCQAA VEAVLKGAPI TQTSSDSAAA  300
AVPAFKAYDI RHVAKKSDAA AVPGDLHSVA ARSRTRFKRS TVRPAAPPAG ALAVSEPGLF  360
RQADSHDTEE SRENGSTFSA ETVEGSHVSQ VEPDAEPADV GLDLSLGLDP RSRNRGGVAG  420
GDPAVVPQKE RQRACPVELG LSLAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-23	LBD family protein