PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV78037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 281aa MW: 30179 Da PI: 8.0688 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 81 | 1.8e-25 | 2 | 119 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer..............edamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C++dC ++ ++ p++q++++ +++k++G++ +++l++a p++ r ++++sl+yeA+ r+ +P+yG+vg++ RWV78037.1 2 SCNGCRVLRKGCSDDCSIRSCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRpgrynyrlkhpwnlAAIFRSLLYEACGRIVNPIYGSVGLL 100 6*********************************************************99*************************************** PP DUF260 81 lklqqqleqlkaelallke 99 l++++ql q+++e++l ++ RWV78037.1 101 LSGSWQLTQAAVEAVLKGA 119 ************9998766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence |
MSCNGCRVLR KGCSDDCSIR SCLQWIKSPE SQANATVFLA KFYGRAGLMN LINAGPDHLR 60 PGRYNYRLKH PWNLAAIFRS LLYEACGRIV NPIYGSVGLL LSGSWQLTQA AVEAVLKGAP 120 IVQIPSETAA STPTPPLKAY DIRHVSKDPG PGGWARAAAE LHQINKAGSR FKRSGAKSAR 180 PAAIHPPEFH EYTGSDSTEP AADAGVGGRG DEECQVEESM WSDDIAEEAS HVSQGEPYRA 240 EEDGEVGLEL TLGLGPVASR RGAARPRPGR VHDRSRPGVV A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-71 | LBD family protein |