PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022777355.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 113aa MW: 12394 Da PI: 4.2694 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 30.5 | 6.2e-10 | 53 | 77 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG + +C++C tV XP_022777355.1 53 CGSCRQLLSYPRGTLLAKCSCCETV 77 ************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 113 aa Download sequence |
MDNTEAEAKQ PKGDQQQGDE EEGPPPGWQS IPPQASAPQQ PLHLSSEMAQ MVCGSCRQLL 60 SYPRGTLLAK CSCCETVNFV LEGSDAPTQT YNWSLPRALI RLEWLSVTVV QCC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-13 | LSD family protein |