PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022777354.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family LSD
Protein Properties Length: 141aa    MW: 15359.3 Da    PI: 5.5139
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022777354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.98.9e-105377125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+Cr lLsYPrG  + +C++C tV
  XP_022777354.1 53 CGSCRQLLSYPRGTLLAKCSCCETV 77
                    ************************9 PP

2zf-LSD145.51.2e-1491115125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     C +C +lL+YP+GApsV+C++C++V
  XP_022777354.1  91 CDSCTVLLMYPYGAPSVKCSSCHFV 115
                     ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MDNTEAEAKQ PKGDQQQGDE EEGPPPGWQS IPPQASAPQQ PLHLSSEMAQ MVCGSCRQLL  60
SYPRGTLLAK CSCCETVNFV LEAHQVGVVK CDSCTVLLMY PYGAPSVKCS SCHFVTEIGE  120
HNRRPPWSVQ QGQPTPPNVV H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.17e-42LSD family protein