PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022776505.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 715aa MW: 79369.5 Da PI: 5.7687

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022776505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.4e-07	141	163	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_022776505.1 141 VPCIFFQK-GLCLKGDRCAFLHGP 163 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MVAATQHHHH QQQQPQQQKQ AAMAVLGATK TSAEEEALKR NTDCVYFLAS PLTCKKGSEC 60 EYRHSEYARI NPRDCYYWLN GNCLNPKCGF RHPPLDGLLG TQVAAPAGSS MSSLNAAATP 120 TPASHTPYNQ GASYSSNKQA VPCIFFQKGL CLKGDRCAFL HGPTTSNKAP QPAATTTTTE 180 PHSLKKAFGA PETSQLQKFP STNVSKTVGV APEGLDEELP RHKGTNTTSV VNGGYVGRSN 240 CLLQAHALDE PSFHGGRDTD EFLRESSPGF DVLVDDELRD SDFYHGEDHY GGTRGHEARN 300 VNEYDISQST NHDAISDVDP EMFHDARGYD SFDHVKGNYG WDQQRASSER ISLGSSTLER 360 WGYSRAESLN HVEESDLRHR LSKHRRVNGL RSVVNHDHAL ENHEGERNFR GSLRDSYHLP 420 PHDSSLSNRL RGRIKLPGKS LVNGTDLRSE REIERGRNLG WLSPGKPQIS SHHGGLRDRI 480 KGRVEGEFNN KEGRNFGGLR IRREIMGERN ADFAGPKSLA ELKVEKNTDN KEYHSLGKRK 540 SIEDYQQTEG DLSFEGPMPL SVILKRKRQS EVAASGSGIA SVNKDVNQKQ SKGSLISSST 600 NTVVSVTPEE ANRKEESKST TADIGTTEVT HGESSQLHST SERETQDGTI ADERMEDHEL 660 EADDQRDGDY YYDQGDEGEY NYEEGENVDP EEEYIEEEDG EDGDDFAKKL GVMFS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MVAATQHHHH QQQQPQQQKQ AAMAVLGATK TSAEEEALKR NTDCVYFLAS PLTCKKGSEC  60
EYRHSEYARI NPRDCYYWLN GNCLNPKCGF RHPPLDGLLG TQVAAPAGSS MSSLNAAATP  120
TPASHTPYNQ GASYSSNKQA VPCIFFQKGL CLKGDRCAFL HGPTTSNKAP QPAATTTTTE  180
PHSLKKAFGA PETSQLQKFP STNVSKTVGV APEGLDEELP RHKGTNTTSV VNGGYVGRSN  240
CLLQAHALDE PSFHGGRDTD EFLRESSPGF DVLVDDELRD SDFYHGEDHY GGTRGHEARN  300
VNEYDISQST NHDAISDVDP EMFHDARGYD SFDHVKGNYG WDQQRASSER ISLGSSTLER  360
WGYSRAESLN HVEESDLRHR LSKHRRVNGL RSVVNHDHAL ENHEGERNFR GSLRDSYHLP  420
PHDSSLSNRL RGRIKLPGKS LVNGTDLRSE REIERGRNLG WLSPGKPQIS SHHGGLRDRI  480
KGRVEGEFNN KEGRNFGGLR IRREIMGERN ADFAGPKSLA ELKVEKNTDN KEYHSLGKRK  540
SIEDYQQTEG DLSFEGPMPL SVILKRKRQS EVAASGSGIA SVNKDVNQKQ SKGSLISSST  600
NTVVSVTPEE ANRKEESKST TADIGTTEVT HGESSQLHST SERETQDGTI ADERMEDHEL  660
EADDQRDGDY YYDQGDEGEY NYEEGENVDP EEEYIEEEDG EDGDDFAKKL GVMFS