PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022776504.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 741aa MW: 82095.7 Da PI: 5.9054

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022776504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	141	163	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_022776504.1 141 VPCIFFQK-GLCLKGDRCAFLHGP 163 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence
MVAATQHHHH QQQQPQQQKQ AAMAVLGATK TSAEEEALKR NTDCVYFLAS PLTCKKGSEC 60 EYRHSEYARI NPRDCYYWLN GNCLNPKCGF RHPPLDGLLG TQVAAPAGSS MSSLNAAATP 120 TPASHTPYNQ GASYSSNKQA VPCIFFQKGL CLKGDRCAFL HGPTTSNKAP QPAATTTTTE 180 PHSLKKAFGA PETSQLQKFP STNVSKTVGV APEGKLTPKV EAAFTRIGTG TERNVPCPTG 240 LDEELPRHKG TNTTSVVNGG YVGRSNCLLQ AHALDEPSFH GGRDTDEFLR ESSPGFDVLV 300 DDELRDSDFY HGEDHYGGTR GHEARNVNEY DISQSTNHDA ISDVDPEMFH DARGYDSFDH 360 VKGNYGWDQQ RASSERISLG SSTLERWGYS RAESLNHVEE SDLRHRLSKH RRVNGLRSVV 420 NHDHALENHE GERNFRGSLR DSYHLPPHDS SLSNRLRGRI KLPGKSLVNG TDLRSEREIE 480 RGRNLGWLSP GKPQISSHHG GLRDRIKGRV EGEFNNKEGR NFGGLRIRRE IMGERNADFA 540 GPKSLAELKV EKNTDNKEYH SLGKRKSIED YQQTEGDLSF EGPMPLSVIL KRKRQSEVAA 600 SGSGIASVNK DVNQKQSKGS LISSSTNTVV SVTPEEANRK EESKSTTADI GTTEVTHGES 660 SQLHSTSERE TQDGTIADER MEDHELEADD QRDGDYYYDQ GDEGEYNYEE GENVDPEEEY 720 IEEEDGEDGD DFAKKLGVMF S

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence

MVAATQHHHH QQQQPQQQKQ AAMAVLGATK TSAEEEALKR NTDCVYFLAS PLTCKKGSEC  60
EYRHSEYARI NPRDCYYWLN GNCLNPKCGF RHPPLDGLLG TQVAAPAGSS MSSLNAAATP  120
TPASHTPYNQ GASYSSNKQA VPCIFFQKGL CLKGDRCAFL HGPTTSNKAP QPAATTTTTE  180
PHSLKKAFGA PETSQLQKFP STNVSKTVGV APEGKLTPKV EAAFTRIGTG TERNVPCPTG  240
LDEELPRHKG TNTTSVVNGG YVGRSNCLLQ AHALDEPSFH GGRDTDEFLR ESSPGFDVLV  300
DDELRDSDFY HGEDHYGGTR GHEARNVNEY DISQSTNHDA ISDVDPEMFH DARGYDSFDH  360
VKGNYGWDQQ RASSERISLG SSTLERWGYS RAESLNHVEE SDLRHRLSKH RRVNGLRSVV  420
NHDHALENHE GERNFRGSLR DSYHLPPHDS SLSNRLRGRI KLPGKSLVNG TDLRSEREIE  480
RGRNLGWLSP GKPQISSHHG GLRDRIKGRV EGEFNNKEGR NFGGLRIRRE IMGERNADFA  540
GPKSLAELKV EKNTDNKEYH SLGKRKSIED YQQTEGDLSF EGPMPLSVIL KRKRQSEVAA  600
SGSGIASVNK DVNQKQSKGS LISSSTNTVV SVTPEEANRK EESKSTTADI GTTEVTHGES  660
SQLHSTSERE TQDGTIADER MEDHELEADD QRDGDYYYDQ GDEGEYNYEE GENVDPEEEY  720
IEEEDGEDGD DFAKKLGVMF S