PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022774150.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

M-type_MADS

Protein Properties

Length: 471aa MW: 53768.8 Da PI: 9.3107

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022774150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.8	1.2e-12	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ie + r f kR +g+ KKA+E S+LCd++ ++iif + XP_022774150.1 10 LIEHEKTRAGVFKKRMKGLKKKAYEFSILCDVKMCMIIFEP 50 58888899999***************************966 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MGRGKLSLKL IEHEKTRAGV FKKRMKGLKK KAYEFSILCD VKMCMIIFEP KLKDNPAKVE 60 VWPSDPVQVN SIIDKYKSKV ASDVQTKIFS IFDFFNMRKR QVHDEVAQVR KANLEAKFPT 120 WDDRIDNFSP EQIATFLTKL DLNLEVVKRK IMLMKGDDQG HLMQSSKSRT LGGFNSQSRP 180 NPSDYASAAF LPENLDHSDN HIQAHVPLEI LNHFDQIQAF PEFPQKKLDF GVSREQQAHI 240 PVKPLNIQLP SLSPADEALV KLSLSLNPIG NLMNPIDKSL RTSMMNNIDF RVQSGIASSS 300 SSSSSSSIPN NVMYNPPPWF SVRHDPRIGM PSNSVMFNRP SIPVLDDPRS TAMQNNVMFK 360 EPKAAFQTCF YTPSMQPELA TYSRQQLIMP HLVPQMLPCE FTDFYHDFNE YEIKNKKQSY 420 NSIQCLTSTL MFFGAKRLFG PIYVNLSPRL GYYLSKLDHV ETTSINTEQI D

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MGRGKLSLKL IEHEKTRAGV FKKRMKGLKK KAYEFSILCD VKMCMIIFEP KLKDNPAKVE  60
VWPSDPVQVN SIIDKYKSKV ASDVQTKIFS IFDFFNMRKR QVHDEVAQVR KANLEAKFPT  120
WDDRIDNFSP EQIATFLTKL DLNLEVVKRK IMLMKGDDQG HLMQSSKSRT LGGFNSQSRP  180
NPSDYASAAF LPENLDHSDN HIQAHVPLEI LNHFDQIQAF PEFPQKKLDF GVSREQQAHI  240
PVKPLNIQLP SLSPADEALV KLSLSLNPIG NLMNPIDKSL RTSMMNNIDF RVQSGIASSS  300
SSSSSSSIPN NVMYNPPPWF SVRHDPRIGM PSNSVMFNRP SIPVLDDPRS TAMQNNVMFK  360
EPKAAFQTCF YTPSMQPELA TYSRQQLIMP HLVPQMLPCE FTDFYHDFNE YEIKNKKQSY  420
NSIQCLTSTL MFFGAKRLFG PIYVNLSPRL GYYLSKLDHV ETTSINTEQI D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	6e-19	M-type_MADS family protein