PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022774098.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

M-type_MADS

Protein Properties

Length: 533aa MW: 59406.2 Da PI: 4.9815

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022774098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.7	1.1e-16	3	46	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ie+ ++ qvtf+kRr ++ KA+E+Sv Cd++va++ fs++g+ XP_022774098.1 3 KIEEVTRYQVTFAKRRSSLIRKANEISVFCDVDVALVAFSPSGR 46 69999************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MRKIEEVTRY QVTFAKRRSS LIRKANEISV FCDVDVALVA FSPSGRWKLQ KLKQLDYIKE 60 DENKLLHLDN QDYEVENEED ASLAQILWCE KNLKNTLEEI KDRKRRLNEA YPSVGQIRVK 120 VWIIEDSKQA RPQGQIPFAY SFTGNQMLNR ARQNLSSSSP FLMQHDPRTW PYRVHNGLLH 180 PLHQPRGISV RVPGASSSFA FNPLADGFPA TYHPGYSTFT HQIQIPPTYP PFQSRAFYWD 240 QTAPSIQNLQ LGVFRNSSMH QPIMGNPPIP FVPYQTLGAL GTSNLYQPIM PGIVDQQLGM 300 LGSSSVQQLM REDHITPGIL NQQPGVLGDS FLDQSLMGNS MTPNVQLQAQ QPRVLGSTSV 360 QNSSNTQNDP SLPPMSQLQV DPNEVNLLCS HGYTTTQNLD VPPPLNTERV SSEPFFTNNI 420 GSITTPTHRD GDNTNNGISG GNSNSNIDNS STNYGNNTIG YCDTNEKHPA GSTQENPPPE 480 SPTDSIFLSS LLDEAAMAND TPKTAGNQED GSMEWDGFTL AENLNLEDLD IIF

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MRKIEEVTRY QVTFAKRRSS LIRKANEISV FCDVDVALVA FSPSGRWKLQ KLKQLDYIKE  60
DENKLLHLDN QDYEVENEED ASLAQILWCE KNLKNTLEEI KDRKRRLNEA YPSVGQIRVK  120
VWIIEDSKQA RPQGQIPFAY SFTGNQMLNR ARQNLSSSSP FLMQHDPRTW PYRVHNGLLH  180
PLHQPRGISV RVPGASSSFA FNPLADGFPA TYHPGYSTFT HQIQIPPTYP PFQSRAFYWD  240
QTAPSIQNLQ LGVFRNSSMH QPIMGNPPIP FVPYQTLGAL GTSNLYQPIM PGIVDQQLGM  300
LGSSSVQQLM REDHITPGIL NQQPGVLGDS FLDQSLMGNS MTPNVQLQAQ QPRVLGSTSV  360
QNSSNTQNDP SLPPMSQLQV DPNEVNLLCS HGYTTTQNLD VPPPLNTERV SSEPFFTNNI  420
GSITTPTHRD GDNTNNGISG GNSNSNIDNS STNYGNNTIG YCDTNEKHPA GSTQENPPPE  480
SPTDSIFLSS LLDEAAMAND TPKTAGNQED GSMEWDGFTL AENLNLEDLD IIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	107	DRKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30260.1	3e-13	MIKC_MADS family protein