PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022772467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 89aa MW: 10095.7 Da PI: 9.2454 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.6 | 2.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+s rqvt+skRrngi+ KA+E+Sv+Cda+va+i+f+s+gk++ y+s XP_022772467.1 9 KRIENSSSRQVTYSKRRNGIMNKAKEISVMCDARVALIVFASSGKMHHYCS 59 79***********************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence |
MGRGKIEIKR IENSSSRQVT YSKRRNGIMN KAKEISVMCD ARVALIVFAS SGKMHHYCSP 60 STQWMSEKMV ETEVDKLVVI EVDMADKAE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-29 | MIKC_MADS family protein |