PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022771733.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 371aa MW: 40276.4 Da PI: 9.0469 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.3e-12 | 26 | 50 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022771733.1 26 QPDCGYFLKTGTCKYGSTCKYHHPK 50 789********************96 PP | |||||||
2 | zf-CCCH | 37.5 | 3.9e-12 | 72 | 95 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_022771733.1 72 KSCPYYMRTGSCKFGIACKFHHPQ 95 66********************97 PP | |||||||
3 | zf-CCCH | 39.8 | 7.4e-13 | 214 | 239 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022771733.1 214 DQPECRYYMNTGTCKYGSDCKYHHPK 239 689*********************96 PP | |||||||
4 | zf-CCCH | 30 | 9.2e-10 | 260 | 284 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G+CkyG++C+F H+ XP_022771733.1 260 GQAVCSSYTMYGFCKYGPTCRFDHP 284 7899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence |
MQCRINPLRT LKGGQYREEL PERVGQPDCG YFLKTGTCKY GSTCKYHHPK DRNGAGPVTL 60 NVLGLPIRQD EKSCPYYMRT GSCKFGIACK FHHPQPASPG AGFPINGLAG SVILPSSGVP 120 YAGGLATWSL PRAPYVSGPR LQTQSYMPVV VSPSQSIIPA HGWSTYMGNM SPISSAGILG 180 STYAYNSMNP AESGSSGQVL LSSTSASNFP ERPDQPECRY YMNTGTCKYG SDCKYHHPKE 240 RIVNSVENGI GPLGLPARPG QAVCSSYTMY GFCKYGPTCR FDHPYVGYPS NYGLSLPLSV 300 FDTSPLTYQR MSPTAHLSEA PLPSKLPDWA RNTGSVSKKH QNLETKNSDN PPERATSPQH 360 SLRSSSKTSH D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-100 | C3H family protein |