PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022771732.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 437aa MW: 47506.9 Da PI: 8.3548 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 9.9e-12 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG++C+F+H+ XP_022771732.1 48 PGEPDCSYYLRTGLCGYGSNCRFNHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.8 | 6.5e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022771732.1 92 QPDCGYFLKTGTCKYGSTCKYHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 37.3 | 4.7e-12 | 138 | 161 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_022771732.1 138 KSCPYYMRTGSCKFGIACKFHHPQ 161 66********************97 PP | |||||||
4 | zf-CCCH | 39.6 | 9e-13 | 280 | 305 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022771732.1 280 DQPECRYYMNTGTCKYGSDCKYHHPK 305 689*********************96 PP | |||||||
5 | zf-CCCH | 29.7 | 1.1e-09 | 326 | 350 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G+CkyG++C+F H+ XP_022771732.1 326 GQAVCSSYTMYGFCKYGPTCRFDHP 350 7899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence |
MPDNRQVQNN AVSNQSAENF EEAISRLKIN DNNQEVGVSK SASYPDRPGE PDCSYYLRTG 60 LCGYGSNCRF NHPAYDAQGG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG 120 AGPVTLNVLG LPIRQDEKSC PYYMRTGSCK FGIACKFHHP QPASPGAGFP INGLAGSVIL 180 PSSGVPYAGG LATWSLPRAP YVSGPRLQTQ SYMPVVVSPS QSIIPAHGWS TYMGNMSPIS 240 SAGILGSTYA YNSMNPAESG SSGQVLLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK 300 YHHPKERIVN SVENGIGPLG LPARPGQAVC SSYTMYGFCK YGPTCRFDHP YVGYPSNYGL 360 SLPLSVFDTS PLTYQRMSPT AHLSEAPLPS KLPDWARNTG SVSKKHQNLE TKNSDNPPER 420 ATSPQHSLRS SSKTSHD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-130 | C3H family protein |