PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022771000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 415aa MW: 44467.9 Da PI: 8.664 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.8 | 6.5e-12 | 50 | 75 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +++rtG+C yG+rC+++H++ XP_022771000.1 50 GVADCVYYMRTGFCAYGNRCRYNHPR 75 7899********************96 PP | |||||||
2 | zf-CCCH | 35.9 | 1.2e-11 | 81 | 105 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ XP_022771000.1 81 EKECSYYLKTGQCKFGITCKFHHPQ 105 679********************97 PP | |||||||
3 | zf-CCCH | 37 | 5.5e-12 | 236 | 262 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ XP_022771000.1 236 PGEPECHYYMRTGDCKFGSSCRYHHPR 262 5799*********************96 PP | |||||||
4 | zf-CCCH | 30.2 | 7.5e-10 | 287 | 307 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f++++G+Ck+G++CkF H+ XP_022771000.1 287 CAFYLQNGQCKFGPTCKFDHP 307 9*******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence |
MEMYGRNPAW NGSQSGHQPE WSPAGAETGL EESMLQLSLR GTEPYPERPG VADCVYYMRT 60 GFCAYGNRCR YNHPRNRAAG EKECSYYLKT GQCKFGITCK FHHPQLAGTS MPVSAPQFYQ 120 PVQSPSVPIP EQYGGASSSV RVARPPLLPG SFVQGAYGPV LFSPGVVPIP GWSHYSAPVS 180 PVLSPGAQPA VGATSLYGLT QLSSSTPSLA GPYPSLPSST GLSSSNQKEQ TFPERPGEPE 240 CHYYMRTGDC KFGSSCRYHH PRDRVVPQTN CVLSPMGLPL RPGVQHCAFY LQNGQCKFGP 300 TCKFDHPVGT IRYSPSASSL IDMPVAPYPV GSLLATLAPS SSSSELRPEL ISGSKKDSYL 360 SRIPSSASTS SSSVGLIFSQ TGSVPLSDLQ FSSQSSGPLS SSRSTRQSGE VRRSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 1e-160 | C3H family protein |