PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022770999.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 476aa MW: 51099.4 Da PI: 8.7546

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022770999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.7e-12	50	75	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +++rtG+C yG+rC+++H++ XP_022770999.1 50 GVADCVYYMRTGFCAYGNRCRYNHPR 75 7899********************96 PP
2	zf-CCCH	40.1	6e-13	94	120	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ XP_022770999.1 94 PGEPACQFYLKTGTCKFGASCKFHHPK 120 57899********************96 PP
3	zf-CCCH	36.6	7.4e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_022770999.1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	36.8	6.5e-12	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ XP_022770999.1 297 PGEPECHYYMRTGDCKFGSSCRYHHPR 323 5799*********************96 PP
5	zf-CCCH	30	8.9e-10	348	368	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f++++G+Ck+G++CkF H+ XP_022770999.1 348 CAFYLQNGQCKFGPTCKFDHP 368 9*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEMYGRNPAW NGSQSGHQPE WSPAGAETGL EESMLQLSLR GTEPYPERPG VADCVYYMRT 60 GFCAYGNRCR YNHPRNRAAV EAAVRATGEY PDRPGEPACQ FYLKTGTCKF GASCKFHHPK 120 HGGGSFSHVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQLAGT SMPVSAPQFY 180 QPVQSPSVPI PEQYGGASSS VRVARPPLLP GSFVQGAYGP VLFSPGVVPI PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGLSSSNQKE QTFPERPGEP 300 ECHYYMRTGD CKFGSSCRYH HPRDRVVPQT NCVLSPMGLP LRPGVQHCAF YLQNGQCKFG 360 PTCKFDHPVG TIRYSPSASS LIDMPVAPYP VGSLLATLAP SSSSSELRPE LISGSKKDSY 420 LSRIPSSAST SSSSVGLIFS QTGSVPLSDL QFSSQSSGPL SSSRSTRQSG EVRRSN

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEMYGRNPAW NGSQSGHQPE WSPAGAETGL EESMLQLSLR GTEPYPERPG VADCVYYMRT  60
GFCAYGNRCR YNHPRNRAAV EAAVRATGEY PDRPGEPACQ FYLKTGTCKF GASCKFHHPK  120
HGGGSFSHVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQLAGT SMPVSAPQFY  180
QPVQSPSVPI PEQYGGASSS VRVARPPLLP GSFVQGAYGP VLFSPGVVPI PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGLSSSNQKE QTFPERPGEP  300
ECHYYMRTGD CKFGSSCRYH HPRDRVVPQT NCVLSPMGLP LRPGVQHCAF YLQNGQCKFG  360
PTCKFDHPVG TIRYSPSASS LIDMPVAPYP VGSLLATLAP SSSSSELRPE LISGSKKDSY  420
LSRIPSSAST SSSSVGLIFS QTGSVPLSDL QFSSQSSGPL SSSRSTRQSG EVRRSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein