PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022770014.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 321aa MW: 36791.4 Da PI: 8.7643

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022770014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.3	2.2e-12	248	272	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+y +C+FaHg XP_022770014.1 248 KTELCNKWQETGTCPYAQNCQFAHG 272 8***********************8 PP
2	zf-CCCH	21.2	5e-07	285	310	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ Cr +++ tC+yG rC+F H+ XP_022770014.1 285 YKTKVCRMVLAGQTCPYGHRCHFRHS 310 9********99********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MQKPTSPFSN QNSSSAATAT SSTTVENQNY VSPPPSPLQN HHQYYHQDIT TDFASMYNFS 60 FPPKSPLPHS LSLTPSSCAS LDDLHINLKL TSDAIATERR LNQARLILEY QQLCYHFDLC 120 FARLQDLFRE LETLRIENSD LRVANNGLIK LLSLSSQAAT KNRNLEREEP LDLNVKRWER 180 RNNNAQRNSL PKSVSVRSTT YLQVNREQGS SDQQRVVNPS VRVYVPHEAT RSEDKAIELE 240 VYNQGMVKTE LCNKWQETGT CPYAQNCQFA HGITQLRPVI RHPTYKTKVC RMVLAGQTCP 300 YGHRCHFRHS LTDQERLLIS R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-77	C3H family protein