PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022766802.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 295aa MW: 30871.1 Da PI: 9.8846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022766802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	36	59	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_022766802.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59 7789******************** PP
2	zf-CCCH	28.4	2.9e-09	100	124	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC++f+ Ck+Gd+C+FaHg XP_022766802.1 100 KTRLCNRFSSAEGCKFGDKCHFAHG 124 8***********************9 PP
3	zf-CCCH	38.2	2.4e-12	262	286	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg XP_022766802.1 262 YKTKLCDNFAK-GSCTFGERCHFAHG 286 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MDTRKRGRHE AGFNVNGGIK KSKPELESLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYNAVAQ IMNLSPAVPP ASRNMAASAT IPNGSPSAVK TRLCNRFSSA EGCKFGDKCH 120 FAHGDWELGK PIAPSHDDPR AMASIPGRMG SRMEPLPPSG PAASFGASAT AKISVDASLA 180 GAIIGKGGVH SKQICRRTGA KLSIREHESD PTLRNIELEG SFEQIKQASA MVRELITSLG 240 PGPGPVKTPG VPGGQGHAGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-57	C3H family protein