PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022766705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 727aa MW: 78781.4 Da PI: 6.0166 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022766705.1 306 PCPDFRK-GACRRGDLCEYAHG 326 8******.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 727 aa Download sequence |
MCCGSEGLKH SPSPTTSNIS FEDSRYPSVA MNHLTVETED TFASLLELAA NNDVEGFKRS 60 IERDPSCVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSS SDADVNRVCG 120 HVKSTALHCA ASGGAVNAID VVKLLLAAGA DANMVDANGY LPVDVIVVPP KLEAVKLTLE 180 ELLATESSVL ERNLRVSTAV ANSNSPPLSP SQENGSPSSA SDSPMKSKST DAPLSSASEK 240 KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDL CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE 360 ELRPLYVSTG SAVLSPRSSA SGATAMDFAA ALSLLPGSPS SVSVMSPSPF TPPMSPSVNG 420 MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAE DFNLLPDFDV QQQQLINELS 480 SLTQPSLSSN SLNRSGRLKT LTPSNLDDLF SAESISPRYS DQALAAAVFS PTHKSAVLNQ 540 FQQQQSMLSP INTNFSPKNM EHPLLQASLS GRMSPRNVEP ISPMSSRVSM LAQREKQQQF 600 RSLSSRELGS GSAAIVGSPV NSWSKWGSSN GTPDWAVNVD ELGKLRRSSS FELGNGDEPD 660 LSWVQSLVKE SPTEIKEKMT APVSGVAPNA ATTEGSNMNS QIDPVDHAVL GVWLEQMQLD 720 QLVAQQN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |