PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022766705.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 727aa    MW: 78781.4 Da    PI: 6.0166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022766705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08306326526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_022766705.1 306 PCPDFRK-GACRRGDLCEYAHG 326
                     8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MCCGSEGLKH SPSPTTSNIS FEDSRYPSVA MNHLTVETED TFASLLELAA NNDVEGFKRS  60
IERDPSCVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSS SDADVNRVCG  120
HVKSTALHCA ASGGAVNAID VVKLLLAAGA DANMVDANGY LPVDVIVVPP KLEAVKLTLE  180
ELLATESSVL ERNLRVSTAV ANSNSPPLSP SQENGSPSSA SDSPMKSKST DAPLSSASEK  240
KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDL CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE  360
ELRPLYVSTG SAVLSPRSSA SGATAMDFAA ALSLLPGSPS SVSVMSPSPF TPPMSPSVNG  420
MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAE DFNLLPDFDV QQQQLINELS  480
SLTQPSLSSN SLNRSGRLKT LTPSNLDDLF SAESISPRYS DQALAAAVFS PTHKSAVLNQ  540
FQQQQSMLSP INTNFSPKNM EHPLLQASLS GRMSPRNVEP ISPMSSRVSM LAQREKQQQF  600
RSLSSRELGS GSAAIVGSPV NSWSKWGSSN GTPDWAVNVD ELGKLRRSSS FELGNGDEPD  660
LSWVQSLVKE SPTEIKEKMT APVSGVAPNA ATTEGSNMNS QIDPVDHAVL GVWLEQMQLD  720
QLVAQQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0C3H family protein