PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022766454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24623.9 Da PI: 8.3987 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.4 | 2.3e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ + ++q +++ +++k+FG+s +l+l++a+pe +r+d+++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_022766454.1 2 SCNGCRVLRKRCSDTCVLRSSLrwiesSQAQGNATLFLAKFFGRSDLLSLISAVPEPQRPDLFQSLLFEACGRTVNPVNGAVGLLSSGNWHICQA 96 6*********************9998777888*************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_022766454.1 97 AVDTVLR 103 9998776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSCNGCRVLR KRCSDTCVLR SSLRWIESSQ AQGNATLFLA KFFGRSDLLS LISAVPEPQR 60 PDLFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLRGGDLLPI PGIFAGVWTP 120 NCDESSDRFG ANSCNFQSRY AQSKPLMTMM MMENQSASMT SDLSLSLTTK FGRGRRGTGR 180 RYEEEKKRDK TISFYSEESQ ITTFESNGTE GSQERKILNL FI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-61 | LBD family protein |