PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022764990.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 681aa MW: 74021 Da PI: 7.0318

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022764990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.9e-08	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_022764990.1 273 PCPEFRK-GACPKGDACEYAHG 293 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MCSGSKSELF PSNFIMEGEL QERKAFALCK CSVLLELAAS DDLVAFKSEV EEKGLDLGEA 60 SFWYGRRIGS RKMGFEERTP LIIAAMFGSV EVLKYIIESG KIDVNRACGS DGVTALHCAV 120 AGGSNSSVEI VKFLLDASAD ANCVDANGNK PIDLIVPALK SLSNSRRKVI ELLLKGDDVV 180 GVSDHVLNLE ESERIALPQL LKEGSEKKEY PIDVSLPDIN NGIYGTDDFR MYTFKVKPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKHTYS CVPCPEFRKG ACPKGDACEY AHGVFESWLH 300 PAQYRTRLCK DEIGCTRKVC FFAHKPDELR PVYASTGSAM PSPRSAAVNA VDMTTLSPLA 360 LGSSSLPLPT ASTPPMSPLA ASSSPKTGGL WQNKINLTPP ALQLPGSRLK TAFSARDFDL 420 EMELLGLESQ LQQQQLMDKI SSLSSPSCWN KEYSRLGDLK PTNLDDAFGS LDHSLLSPLK 480 GLSVKSAKPT QLHSPTGLQI RQNLNQLRAS YPMNLSSSSV RKPSAFGFDS SAAVAAALMN 540 SRSSAFAKRS QSFIDRGAVT SRAGLTAPAN SASMMSANIS DWSSPDGKLD WGIQGDELNK 600 LRKSASFGFR NSNPAATATT NMTPSDVDEP DVSWVHSLVR DVPPVGGGLQ QQRQYSIGKG 660 TRETLPPWVD PMYIEQEQMV A

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MCSGSKSELF PSNFIMEGEL QERKAFALCK CSVLLELAAS DDLVAFKSEV EEKGLDLGEA  60
SFWYGRRIGS RKMGFEERTP LIIAAMFGSV EVLKYIIESG KIDVNRACGS DGVTALHCAV  120
AGGSNSSVEI VKFLLDASAD ANCVDANGNK PIDLIVPALK SLSNSRRKVI ELLLKGDDVV  180
GVSDHVLNLE ESERIALPQL LKEGSEKKEY PIDVSLPDIN NGIYGTDDFR MYTFKVKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKHTYS CVPCPEFRKG ACPKGDACEY AHGVFESWLH  300
PAQYRTRLCK DEIGCTRKVC FFAHKPDELR PVYASTGSAM PSPRSAAVNA VDMTTLSPLA  360
LGSSSLPLPT ASTPPMSPLA ASSSPKTGGL WQNKINLTPP ALQLPGSRLK TAFSARDFDL  420
EMELLGLESQ LQQQQLMDKI SSLSSPSCWN KEYSRLGDLK PTNLDDAFGS LDHSLLSPLK  480
GLSVKSAKPT QLHSPTGLQI RQNLNQLRAS YPMNLSSSSV RKPSAFGFDS SAAVAAALMN  540
SRSSAFAKRS QSFIDRGAVT SRAGLTAPAN SASMMSANIS DWSSPDGKLD WGIQGDELNK  600
LRKSASFGFR NSNPAATATT NMTPSDVDEP DVSWVHSLVR DVPPVGGGLQ QQRQYSIGKG  660
TRETLPPWVD PMYIEQEQMV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein