PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022763639.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

GATA

Protein Properties

Length: 843aa MW: 90913.5 Da PI: 9.5671

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022763639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.1	6.9e-15	806	841	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp g++tLCnaCGl+++ k XP_022763639.1 806 CTHCGISSkkTPMMRRGPAGPRTLCNACGLKWANKA 841 ***88888********************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence
MGSTFLSIPT KRAMPDPTAS SNGPSKRSKP PSTPLCIRPA HVAFRLLCHV SRVGGIIGKS 60 GSVIKQLQQV TGSKIRIEDA PAESPDRVIT VVGPSAVNTK IMLNIGSLGN GDDSRVEEID 120 VSKAQEALVR VFERILEVAA ESNGAALGMV SCRLLAEVKQ VGSVIGKGGK VVEKIREDTG 180 TKIRVLTDKL PACAGPTEEI VEIEGGVLAV KKALVAVSHR LQDCPPVNKT KVTENRTIES 240 VLPETLHRPI ELLPEETLHR PIDLLPKETL HRPIDLLPQE TLRRPIDLLP RETLRRPIEV 300 VPQDPLCRPI DVVPQEFFHR HIEVVSQEAL SDLHVDHLSQ RSSLVPSIPG SSISYATRAH 360 PLSLESEKAP PLDTKTMQQE VVFKILCPSG RVGGVIGKGG AIIKALQSDT GATITIGATI 420 TDCDERLITV TASENPESRY SPAQKAVVLV FVRAFEASIE KGLDSGSGKV SNVTTRVVVP 480 SSQVGCLLGK GGAIISEMRK ATGTIMRILG TDQVPKCVTE NDQVVQISGG YLNVRDAIYH 540 VTGRLRENLF STTLKSAGAK SSSLVLTETS PYERLLDATP FGLQVLSGVS HSLSRHTTLA 600 LNRMDPLGLS HSSDRPRSPG LWTSEQMATG LNPRNIVDIG RGLTSFRGGF ELCSGNKSAI 660 VTNTTVEIRV PENVIDSVYG ENGRNLARLR EVQEVLLLLG GYEIPSGIPA LGTVSVTQRG 720 MGDFPGRSIQ PQRAASLNRF REKRKERCFD KKIRYTVRKE VALRMQRKKG QFTSSKAISD 780 EVASASSGWS GAAGSGQDES MQEILCTHCG ISSKKTPMMR RGPAGPRTLC NACGLKWANK 840 ALN

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence

MGSTFLSIPT KRAMPDPTAS SNGPSKRSKP PSTPLCIRPA HVAFRLLCHV SRVGGIIGKS  60
GSVIKQLQQV TGSKIRIEDA PAESPDRVIT VVGPSAVNTK IMLNIGSLGN GDDSRVEEID  120
VSKAQEALVR VFERILEVAA ESNGAALGMV SCRLLAEVKQ VGSVIGKGGK VVEKIREDTG  180
TKIRVLTDKL PACAGPTEEI VEIEGGVLAV KKALVAVSHR LQDCPPVNKT KVTENRTIES  240
VLPETLHRPI ELLPEETLHR PIDLLPKETL HRPIDLLPQE TLRRPIDLLP RETLRRPIEV  300
VPQDPLCRPI DVVPQEFFHR HIEVVSQEAL SDLHVDHLSQ RSSLVPSIPG SSISYATRAH  360
PLSLESEKAP PLDTKTMQQE VVFKILCPSG RVGGVIGKGG AIIKALQSDT GATITIGATI  420
TDCDERLITV TASENPESRY SPAQKAVVLV FVRAFEASIE KGLDSGSGKV SNVTTRVVVP  480
SSQVGCLLGK GGAIISEMRK ATGTIMRILG TDQVPKCVTE NDQVVQISGG YLNVRDAIYH  540
VTGRLRENLF STTLKSAGAK SSSLVLTETS PYERLLDATP FGLQVLSGVS HSLSRHTTLA  600
LNRMDPLGLS HSSDRPRSPG LWTSEQMATG LNPRNIVDIG RGLTSFRGGF ELCSGNKSAI  660
VTNTTVEIRV PENVIDSVYG ENGRNLARLR EVQEVLLLLG GYEIPSGIPA LGTVSVTQRG  720
MGDFPGRSIQ PQRAASLNRF REKRKERCFD KKIRYTVRKE VALRMQRKKG QFTSSKAISD  780
EVASASSGWS GAAGSGQDES MQEILCTHCG ISSKKTPMMR RGPAGPRTLC NACGLKWANK  840
ALN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	6e-45	GATA family protein