PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022763177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 1694aa MW: 184448 Da PI: 4.6872 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.7e-06 | 1671 | 1693 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++ C+ f+++G+Ck G++C ++H XP_022763177.1 1671 GQRVCK-FHENGHCKKGASCDYMH 1693 6789**.9999************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1694 aa Download sequence |
MDAEEEEPLL VPNVESSLRL EGDALTTAAA SQIQHEKTES QQCELETVAE FDESEPPASS 60 AGFPVAEKKK EGDGKGVVDV EVVPEAAVGD EEGGEDLIFG EKKHEMLDAG DGIKASSPTD 120 GNEEGEDLAD RGESDVAEVE EKSDMVEDTT VDGVMEEMER ANVSNERGTA EGMKVPLAKQ 180 TVTELPEEAG NLEERGIVEA AEVANVTEQT MVIEETVVAD VMEKTGITKE REVADVAVER 240 EMLEEKLVVD VTEETGVIDM VAKRGLPDDK MEVNLADQKG VLEETRVIEM IDKSEILEEK 300 LVANVSEQTG NLEDSNAVRD SGMDMAEVAK DIVMEEGSEK AEDTETGTVV ENVEKAERTE 360 AEMGDAAEGM EAAADTEMLD ITEEVETEAA EGTEDTEEVE DASKASGGKR KRGKSLNSKV 420 LARAPSRKKV EEDVCFICFD GGDLVLCDRR GCPKAYHTSC VGRDEAFFRA KGKWNCGWHL 480 CSNCKKNAYY MCYTCTFSLC KGCIKDAVIL CVRGNKGLCE SCMNLVMLIE RNEQAQVDFD 540 DKSSWEYLFK DYWIDLKGRL SITSDELAQS KNPWKGSEYR SAKKESPNEP YGFNDGGGSG 600 SDSSSGNAEV TVSKRRKTRS QTKSWKRGGD LPNTVTARGE GASTDESAEW ASKELLEVVM 660 HMRNGDKSVL SRMELSQLIL DYIQKHKLRD HQSKSYVICD LRLKNLFGKA RVGHIEMLNL 720 LDPHILFTKE DSQTDDLQGS VVDAEVNQLE ADWNSDAFTK TVKDKKRKTR KKGDARGLKS 780 NLDDYAAIDM HNINLIYLRR NLVEDLIEDT ETFHDKVVGS FVRLRISGAG QKQDLYRLVQ 840 VIGTSKVAEP YRVGKRTTDF LLEILNLNKT EVISIDIISN QEFTEDECKR LRQSIKCGLI 900 NRLTVADIQD KAMAIQAVRV KDWLESEIMR LSHLRDRASE KGRRKELREC VEKLQILKTP 960 EERQRRLEEI PVIHVDPNMD PSYESEEDEG EDDKRQDNFM RPRSGGFSRR GREPISPRKG 1020 GFNSSDSWSG TRNNSSMHRE LSRNLSNKGF TSKGDDSIGA SEIGNENLWN LGRERETQQP 1080 NSWDKPKTAS SLEIGTRNTR NIVVQEPSAK VVSEISAIPL SAGVTTAVQI NETEKIWHYQ 1140 DPSGKVQGPF SMVQLQKWSN TGYFPAELKI WRTNEKQDDS ILLTDALAGK FQKDSPVADN 1200 SFPNSQMAIY GNSLGATLKQ GMESQVGERS RFDQNHVAWS PQRSLGTSGQ SARGSWKSQT 1260 EVSSSTVGPA PSSLEIPRYS RDTWGSNTNL PSPTPNQNPT GGTKAQANES KQSPTPVQSS 1320 GSLTVANPFQ GGSTGLQPPI VVSESGSPAA PIVHSHMMVS GVSLQNLVQS VTAHNPSVDT 1380 HGWGSGSVSR QEAVAASSIP ATGNQAWRNA SAQKLEPNPS LAMLAQPAAY GHWNDTSQSG 1440 QNSAPFGTGN PAVVFPTPSQ PIMLPSDSWR PTVPVQSNHQ LPAPPNLPWG VAVADNQGAA 1500 LRQAPGYQNT GWGPMPGNQN MGWGAPLPAT TNVNWGASSQ GSASVNQNPS WAAPSQVPVP 1560 GNANSGWTAP GNAMQGWAPL GQGPAVVNAS SGWVAAGQGA AASGSANPGY VAPSGNSGMW 1620 GNEQNLNGDK FSNQTDRGSQ GGDSGFGGVK PWSRQSSFGS GGGSSRSPFK GQRVCKFHEN 1680 GHCKKGASCD YMHN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 0.0 | C3H family protein |