PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022763175.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 1700aa MW: 184989 Da PI: 4.6976

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022763175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.8e-06	1677	1699	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++ C+ f+++G+Ck G++C ++H XP_022763175.1 1677 GQRVCK-FHENGHCKKGASCDYMH 1699 6789.9999*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1700 aa Download sequence
MDAEEEEPLL VPNVESSLRL EGDALTTAAA SQIQHEKTES QQCELETVAE FDESEPPASS 60 AGFPVAEKKK EGDGKGVVDV EVVPEAAVGD EEGGEDLIFG EKKHEMLDAG DGIKASSPTD 120 GNEEGEDLAD RGESDVAEVE EKSDMVEDTT VDGVMEEMER ANVSNERGTA EGMKVPLAKQ 180 TVTELPEEAG NLEERGIVEA AEVANVTEQT MVIEETVVAD VMEKTGITKE REVADVAVER 240 EMLEEKLVVD VTEETGVIDM VAKRGLPDDK MEVNLADQKG VLEETRVIEM IDKSEILEEK 300 LVANVSEQTG NLEDSNAVRD SGMDMAEVAK DIVMEEGSEK AEDTETGTVV ENVEKAERTE 360 AEMGDAAEGM EAAADTEMLD ITEEVETEAA EGTEDTEEVE DASKASGGKR KRGKSLNSKV 420 LARAPSRKKV EEDVCFICFD GGDLVLCDRR GCPKAYHTSC VGRDEAFFRA KGKWNCGWHL 480 CSNCKKNAYY MCYTCTFSLC KGCIKDAVIL CVRGNKGLCE SCMNLVMLIE RNEQAQVDFD 540 DKSSWEYLFK DYWIDLKGRL SITSDELAQS KNPWKGSEYR SAKKESPNEP YGFNDGGGSG 600 SDSSSGNAEV TVSKRRKTRS QTKSWKRGGD LPNTVTARGE GASTDESAEW ASKELLEVVM 660 HMRNGDKSVL SRMELSQLIL DYIQKHKLRD HQSKSYVICD LRLKNLFGKA RVGHIEMLNL 720 LDPHILFTKE DSQTDDLQGS VVDAEVNQLE ADWNSDAFTK TVKDKKRKTR KKGDARGLKS 780 NLDDYAAIDM HNINLIYLRR NLVEDLIEDT ETFHDKVVGS FVRLRISGAG QKQDLYRLVQ 840 VIGTSKVAEP YRVGKRTTDF LLEILNLNKT EVISIDIISN QEFTEDECKR LRQSIKCGLI 900 NRLTVWLESE IMRLSHLRDR ASEKGRRKEL RECVEKLQIL KTPEERQRRL EEIPVIHVDP 960 NMDPSYESEE DEGEDDKRQD NFMRPRSGGF SRRGREPISP RKGGFNSSDS WSGTRNNSSM 1020 HRELSRNLSN KGFTSKGDDS IGASEIGNEN LWNLGRERET QQPNSWDKPK TASSLEIGTR 1080 NTRNIVVQEP SAKVVSEISA IPLSAGVTTA VQINETEKIW HYQDPSGKVQ GPFSMVQLQK 1140 WSNTGYFPAE LKIWRTNEKQ DDSILLTDAL AGKFQKDSPV ADNSFPNSQM AIYGNSLGAT 1200 LKQGMESQVG ERSRFDQNHV AWSPQRSLGT SGQSARGSWK SQTEVSSSTV GPAPSSLEIP 1260 RYSRDTWGSN TNLPSPTPNQ NPTGGTKAQA NESKQSPTPV QSSGSLTVAN PFQGGSTGLQ 1320 PPIVVSESGS PAAPIVHSHM MVSGESHRTQ VNAQASINLG ADMKNAGVSL QNLVQSVTAH 1380 NPSVDTHGWG SGSVSRQEAV AASSIPATGN QAWRNASAQK LEPNPSLAML AQPAAYGHWN 1440 DTSQSGQNSA PFGTGNPAVV FPTPSQPIML PSDSWRPTVP VQSNHQLPAP PNLPWGVAVA 1500 DNQGAALRQA PGYQNTGWGP MPGNQNMGWG APLPATTNVN WGASSQGSAS VNQNPSWAAP 1560 SQVPVPGNAN SGWTAPGNAM QGWAPLGQGP AVVNASSGWV AAGQGAAASG SANPGYVAPS 1620 GNSGMWGNEQ NLNGDKFSNQ TDRGSQGGDS GFGGVKPWSR QSSFGSGGGS SRSPFKGQRV 1680 CKFHENGHCK KGASCDYMHN

Sequence ? help Back to Top

Protein Sequence Length: 1700 aa Download sequence

MDAEEEEPLL VPNVESSLRL EGDALTTAAA SQIQHEKTES QQCELETVAE FDESEPPASS  60
AGFPVAEKKK EGDGKGVVDV EVVPEAAVGD EEGGEDLIFG EKKHEMLDAG DGIKASSPTD  120
GNEEGEDLAD RGESDVAEVE EKSDMVEDTT VDGVMEEMER ANVSNERGTA EGMKVPLAKQ  180
TVTELPEEAG NLEERGIVEA AEVANVTEQT MVIEETVVAD VMEKTGITKE REVADVAVER  240
EMLEEKLVVD VTEETGVIDM VAKRGLPDDK MEVNLADQKG VLEETRVIEM IDKSEILEEK  300
LVANVSEQTG NLEDSNAVRD SGMDMAEVAK DIVMEEGSEK AEDTETGTVV ENVEKAERTE  360
AEMGDAAEGM EAAADTEMLD ITEEVETEAA EGTEDTEEVE DASKASGGKR KRGKSLNSKV  420
LARAPSRKKV EEDVCFICFD GGDLVLCDRR GCPKAYHTSC VGRDEAFFRA KGKWNCGWHL  480
CSNCKKNAYY MCYTCTFSLC KGCIKDAVIL CVRGNKGLCE SCMNLVMLIE RNEQAQVDFD  540
DKSSWEYLFK DYWIDLKGRL SITSDELAQS KNPWKGSEYR SAKKESPNEP YGFNDGGGSG  600
SDSSSGNAEV TVSKRRKTRS QTKSWKRGGD LPNTVTARGE GASTDESAEW ASKELLEVVM  660
HMRNGDKSVL SRMELSQLIL DYIQKHKLRD HQSKSYVICD LRLKNLFGKA RVGHIEMLNL  720
LDPHILFTKE DSQTDDLQGS VVDAEVNQLE ADWNSDAFTK TVKDKKRKTR KKGDARGLKS  780
NLDDYAAIDM HNINLIYLRR NLVEDLIEDT ETFHDKVVGS FVRLRISGAG QKQDLYRLVQ  840
VIGTSKVAEP YRVGKRTTDF LLEILNLNKT EVISIDIISN QEFTEDECKR LRQSIKCGLI  900
NRLTVWLESE IMRLSHLRDR ASEKGRRKEL RECVEKLQIL KTPEERQRRL EEIPVIHVDP  960
NMDPSYESEE DEGEDDKRQD NFMRPRSGGF SRRGREPISP RKGGFNSSDS WSGTRNNSSM  1020
HRELSRNLSN KGFTSKGDDS IGASEIGNEN LWNLGRERET QQPNSWDKPK TASSLEIGTR  1080
NTRNIVVQEP SAKVVSEISA IPLSAGVTTA VQINETEKIW HYQDPSGKVQ GPFSMVQLQK  1140
WSNTGYFPAE LKIWRTNEKQ DDSILLTDAL AGKFQKDSPV ADNSFPNSQM AIYGNSLGAT  1200
LKQGMESQVG ERSRFDQNHV AWSPQRSLGT SGQSARGSWK SQTEVSSSTV GPAPSSLEIP  1260
RYSRDTWGSN TNLPSPTPNQ NPTGGTKAQA NESKQSPTPV QSSGSLTVAN PFQGGSTGLQ  1320
PPIVVSESGS PAAPIVHSHM MVSGESHRTQ VNAQASINLG ADMKNAGVSL QNLVQSVTAH  1380
NPSVDTHGWG SGSVSRQEAV AASSIPATGN QAWRNASAQK LEPNPSLAML AQPAAYGHWN  1440
DTSQSGQNSA PFGTGNPAVV FPTPSQPIML PSDSWRPTVP VQSNHQLPAP PNLPWGVAVA  1500
DNQGAALRQA PGYQNTGWGP MPGNQNMGWG APLPATTNVN WGASSQGSAS VNQNPSWAAP  1560
SQVPVPGNAN SGWTAPGNAM QGWAPLGQGP AVVNASSGWV AAGQGAAASG SANPGYVAPS  1620
GNSGMWGNEQ NLNGDKFSNQ TDRGSQGGDS GFGGVKPWSR QSSFGSGGGS SRSPFKGQRV  1680
CKFHENGHCK KGASCDYMHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein