PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022763174.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 1717aa MW: 186843 Da PI: 4.7024

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022763174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.9e-06	1694	1716	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++ C+ f+++G+Ck G++C ++H XP_022763174.1 1694 GQRVCK-FHENGHCKKGASCDYMH 1716 6789.9999*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1717 aa Download sequence
MDAEEEEPLL VPNVESSLRL EGDALTTAAA SQIQHEKTES QQCELETVAE FDESEPPASS 60 AGFPVAEKKK EGDGKGVVDV EVVPEAAVGD EEGGEDLIFG EKKHEMLDAG DGIKASSPTD 120 GNEEGEDLAD RGESDVAEVE EKSDMVEDTT VDGVMEEMER ANVSNERGTA EGMKVPLAKQ 180 TVTELPEEAG NLEERGIVEA AEVANVTEQT MVIEETVVAD VMEKTGITKE REVADVAVER 240 EMLEEKLVVD VTEETGVIDM VAKRGLPDDK MEVNLADQKG VLEETRVIEM IDKSEILEEK 300 LVANVSEQTG NLEDSNAVRD SGMDMAEVAK DIVMEEGSEK AEDTETGTVV ENVEKAERTE 360 AEMGDAAEGM EAAADTEMLD ITEEVETEAA EGTEDTEEVE DASKASGGKR KRGKSLNSKV 420 LARAPSRKKV EEDVCFICFD GGDLVLCDRR GCPKAYHTSC VGRDEAFFRA KGKWNCGWHL 480 CSNCKKNAYY MCYTCTFSLC KGCIKDAVIL CVRGNKGLCE SCMNLVMLIE RNEQAQVDFD 540 DKSSWEYLFK DYWIDLKGRL SITSDELAQS KNPWKGSEYR SAKKESPNEP YGFNDGGGSG 600 SDSSSGNAEV TVSKRRKTRS QTKSWKRGGD LPNTVTARGE GASTDESAEW ASKELLEVVM 660 HMRNGDKSVL SRMELSQLIL DYIQKHKLRD HQSKSYVICD LRLKNLFGKA RVGHIEMLNL 720 LDPHILFTKE DSQTDDLQGS VVDAEVNQLE ADWNSDAFTK TVKDKKRKTR KKGDARGLKS 780 NLDDYAAIDM HNINLIYLRR NLVEDLIEDT ETFHDKVVGS FVRLRISGAG QKQDLYRLVQ 840 VIGTSKVAEP YRVGKRTTDF LLEILNLNKT EVISIDIISN QEFTEDECKR LRQSIKCGLI 900 NRLTVADIQD KAMAIQAVRV KDWLESEIMR LSHLRDRASE KGRRKELREC VEKLQILKTP 960 EERQRRLEEI PVIHVDPNMD PSYESEEDEG EDDKRQDNFM RPRSGGFSRR GREPISPRKG 1020 GFNSSDSWSG TRNNSSMHRE LSRNLSNKGF TSKGDDSIGA SEIGNENLWN LGRERETQQP 1080 NSWDKPKTAS SLEIGTRNTR NIVVQEPSAK VVSEISAIPL SAGVTTAVQI NETEKIWHYQ 1140 DPSGKVQGPF SMVQLQKWSN TGYFPAELKI WRTNEKQDDS ILLTDALAGK FQKDSPVADN 1200 SFPNSQMAIY GNSLGATLKQ GMESQVGERS RFDQNHVAWS PQRSLGTSGQ SARGSWKSQT 1260 EVSSSTVGPA PSSLEIPRYS RDTWGSNTNL PSPTPNQNPT GGTKAQANES KQSPTPVQSS 1320 GSLTVANPFQ GGSTGLQPPI VVSESGSPAA PIVHSHMMVS GESHRTQVNA QASINLGADM 1380 KNAGVSLQNL VQSVTAHNPS VDTHGWGSGS VSRQEAVAAS SIPATGNQAW RNASAQKLEP 1440 NPSLAMLAQP AAYGHWNDTS QSGQNSAPFG TGNPAVVFPT PSQPIMLPSD SWRPTVPVQS 1500 NHQLPAPPNL PWGVAVADNQ GAALRQAPGY QNTGWGPMPG NQNMGWGAPL PATTNVNWGA 1560 SSQGSASVNQ NPSWAAPSQV PVPGNANSGW TAPGNAMQGW APLGQGPAVV NASSGWVAAG 1620 QGAAASGSAN PGYVAPSGNS GMWGNEQNLN GDKFSNQTDR GSQGGDSGFG GVKPWSRQSS 1680 FGSGGGSSRS PFKGQRVCKF HENGHCKKGA SCDYMHN

Sequence ? help Back to Top

Protein Sequence Length: 1717 aa Download sequence

MDAEEEEPLL VPNVESSLRL EGDALTTAAA SQIQHEKTES QQCELETVAE FDESEPPASS  60
AGFPVAEKKK EGDGKGVVDV EVVPEAAVGD EEGGEDLIFG EKKHEMLDAG DGIKASSPTD  120
GNEEGEDLAD RGESDVAEVE EKSDMVEDTT VDGVMEEMER ANVSNERGTA EGMKVPLAKQ  180
TVTELPEEAG NLEERGIVEA AEVANVTEQT MVIEETVVAD VMEKTGITKE REVADVAVER  240
EMLEEKLVVD VTEETGVIDM VAKRGLPDDK MEVNLADQKG VLEETRVIEM IDKSEILEEK  300
LVANVSEQTG NLEDSNAVRD SGMDMAEVAK DIVMEEGSEK AEDTETGTVV ENVEKAERTE  360
AEMGDAAEGM EAAADTEMLD ITEEVETEAA EGTEDTEEVE DASKASGGKR KRGKSLNSKV  420
LARAPSRKKV EEDVCFICFD GGDLVLCDRR GCPKAYHTSC VGRDEAFFRA KGKWNCGWHL  480
CSNCKKNAYY MCYTCTFSLC KGCIKDAVIL CVRGNKGLCE SCMNLVMLIE RNEQAQVDFD  540
DKSSWEYLFK DYWIDLKGRL SITSDELAQS KNPWKGSEYR SAKKESPNEP YGFNDGGGSG  600
SDSSSGNAEV TVSKRRKTRS QTKSWKRGGD LPNTVTARGE GASTDESAEW ASKELLEVVM  660
HMRNGDKSVL SRMELSQLIL DYIQKHKLRD HQSKSYVICD LRLKNLFGKA RVGHIEMLNL  720
LDPHILFTKE DSQTDDLQGS VVDAEVNQLE ADWNSDAFTK TVKDKKRKTR KKGDARGLKS  780
NLDDYAAIDM HNINLIYLRR NLVEDLIEDT ETFHDKVVGS FVRLRISGAG QKQDLYRLVQ  840
VIGTSKVAEP YRVGKRTTDF LLEILNLNKT EVISIDIISN QEFTEDECKR LRQSIKCGLI  900
NRLTVADIQD KAMAIQAVRV KDWLESEIMR LSHLRDRASE KGRRKELREC VEKLQILKTP  960
EERQRRLEEI PVIHVDPNMD PSYESEEDEG EDDKRQDNFM RPRSGGFSRR GREPISPRKG  1020
GFNSSDSWSG TRNNSSMHRE LSRNLSNKGF TSKGDDSIGA SEIGNENLWN LGRERETQQP  1080
NSWDKPKTAS SLEIGTRNTR NIVVQEPSAK VVSEISAIPL SAGVTTAVQI NETEKIWHYQ  1140
DPSGKVQGPF SMVQLQKWSN TGYFPAELKI WRTNEKQDDS ILLTDALAGK FQKDSPVADN  1200
SFPNSQMAIY GNSLGATLKQ GMESQVGERS RFDQNHVAWS PQRSLGTSGQ SARGSWKSQT  1260
EVSSSTVGPA PSSLEIPRYS RDTWGSNTNL PSPTPNQNPT GGTKAQANES KQSPTPVQSS  1320
GSLTVANPFQ GGSTGLQPPI VVSESGSPAA PIVHSHMMVS GESHRTQVNA QASINLGADM  1380
KNAGVSLQNL VQSVTAHNPS VDTHGWGSGS VSRQEAVAAS SIPATGNQAW RNASAQKLEP  1440
NPSLAMLAQP AAYGHWNDTS QSGQNSAPFG TGNPAVVFPT PSQPIMLPSD SWRPTVPVQS  1500
NHQLPAPPNL PWGVAVADNQ GAALRQAPGY QNTGWGPMPG NQNMGWGAPL PATTNVNWGA  1560
SSQGSASVNQ NPSWAAPSQV PVPGNANSGW TAPGNAMQGW APLGQGPAVV NASSGWVAAG  1620
QGAAASGSAN PGYVAPSGNS GMWGNEQNLN GDKFSNQTDR GSQGGDSGFG GVKPWSRQSS  1680
FGSGGGSSRS PFKGQRVCKF HENGHCKKGA SCDYMHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein