PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022762554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26798.9 Da PI: 10.4859 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.5 | 1.5e-22 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i k n qvtfskRr+g++KKA+EL++LC+++va+iifs+ k++ + XP_022762554.1 16 KIAKKNNLQVTFSKRRAGLFKKASELCTLCGVDVAIIIFSPAKKVFSF 63 578899**************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MTKNPNIGRQ KITMAKIAKK NNLQVTFSKR RAGLFKKASE LCTLCGVDVA IIIFSPAKKV 60 FSFGHPRVES IIDRFLSSRN LLFRNSTTSR LVEAHRNANI HELNIQLTQL LEHLEIEKRR 120 GEAVDKIRKA SQKNQCWWQA PINELGLDEL EQLRIALEEL KKNVAKQANK ALVESANNQW 180 QFLAVNGIGR HVNPFENKFN ETNLHCSVTD HQAYGFDSYK IKKASKGTLV CGPHTP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-56 | M-type_MADS family protein |